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[56] Yang Z, Zeng X, Zhao Y, Chen R. AlphaFold2 and its applications in the fields of biology and medicine. Signal Transduct Target Ther 2023; 8(1): 115.

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[53] Zhang C, Wang D, Hao Y, Wu S, Luo J, . . . Fu XD, Yang X, Chen R, Teng Y. LncRNA CCTT-mediated RNA-DNA and RNA-protein interactions facilitate the recruitment of CENP-C to centromeric DNA during kinetochore assembly. Mol Cell 2022; 82(21): 4018-32 e9.

[52] Zhang Y, Qiao X, Liu L, . . . He S, Chen R, Chen C. Long noncoding RNA MAGI2-AS3 regulates the H2O2 level and cell senescence via HSPA8. Redox Biol 2022; 54: 102383.

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[41] Fan Z, Chen X, Liu L, Zhu C, Xu J, . . . Cui Y, Zhang X, Chen R. Association of the Polymorphism rs13259960 in SLEAR With Predisposition to Systemic Lupus Erythematosus. Arthritis Rheumatol 2020; 72(6): 985-996.

[40] Hao Y, Wang D, Wu S, Li X, . . . Fu XD, Chen R, He S. Active retrotransposons help maintain pericentromeric heterochromatin required for faithful cell division. Genome Res 2020; 30(11): 1570-1582.

[39] Wu S, Wu E, Wang D, Niu Y, Yue H, Zhang D, Luo J, Chen R. LncRNA HRCEG, regulated by HDAC1, inhibits cells proliferation and epithelial-mesenchymal-transition in gastric cancer. Cancer Genet 2020; 241: 25-33.

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[37] Fan Z, Chen R, Chen X. SpatialDB: a database for spatially resolved transcriptomes. Nucleic Acids Res 2020; 48(D1): D233-D237.

[36] Wang Y, Zhu P, Luo J, Wang J, Liu Z, Wu W, . . . Chen R, Tian Y, Fan Z. LncRNA HAND2-AS1 promotes liver cancer stem cell self-renewal via BMP signaling. EMBO J 2019: e101110.

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[34] Wang J, Zhang P, Lu Y, Li Y, Zheng Y, Kan Y, Chen R, He S. piRBase: a comprehensive database of piRNA sequences. Nucleic Acids Res 2019; 47(D1): D175-D180.

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[29] Cui Y, Chen X, Niu Y, Wang D, Luo H, Fan Z, . . . Chen R. Dynamic-BM: multispecies Dynamic BodyMap database from temporal RNA-seq data. Brief Bioinform 2018; 19(6): 1302-1309.

[28] Yan X, Zhang D, Wu W, Wu S, Qian J, Hao Y, . . . Chen R, Fan Z. Mesenchymal Stem Cells Promote Hepatocarcinogenesis via lncRNA-MUF Interaction with ANXA2 and miR-34a. Cancer Res 2017; 77(23): 6704-6716.

[27] Wang Z, Hao Y, Zhang C, Wang Z, Liu X, Li G, . . . Chen R, Jiang T. The Landscape of Viral Expression Reveals Clinically Relevant Viruses with Potential Capability of Promoting Malignancy in Lower-Grade Glioma. Clin Cancer Res 2017; 23(9): 2177-2185.

[26] Sun Y, Wei G, Luo H, Wu W, Skogerbo G, Luo J, Chen R. The long noncoding RNA SNHG1 promotes tumor growth through regulating transcription of both local and distal genes. Oncogene 2017; 36(49): 6774-6783.

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[20] Xiao T, Liu L, Li H, Sun Y, Luo H, Li T, . . . Chen R. Long Noncoding RNA ADINR Regulates Adipogenesis by Transcriptionally Activating C/EBPalpha. Stem Cell Reports 2015; 5: 856-865.

[19] Wang Y, He L, Du Y, Zhu P, Huang G, Luo J, . . . Chen R, Fan Z. The Long Noncoding RNA lncTCF7 Promotes Self-Renewal of Human Liver Cancer Stem Cells through Activation of Wnt Signaling. Cell Stem Cell 2015; 16: 413-425.

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[13] He S, Su H, Liu C, Skogerbo G, He H, He D, . . . Chen R. MicroRNA-encoding long non-coding RNAs. BMC Genomics 2008; 9: 236

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[11] He H, Wang J, Liu T, Liu XS, Li T, Wang Y, . . . Chen R. Mapping the C-elegans noncoding transcriptome with a whole-genome tiling microarray. Genome Res 2007; 17: 1471-1477.

[10] Zhang Z, Liu C, Skogerbo G, Zhu X, Lu H, Chen L, . . . Chen R. Dynamic changes in subgraph preference profiles of crucial transcription factors. Plos Computational Biology 2006; 2: 383-391.

[9] Zhang Y, Li S, Skogerbo G, Zhang Z, Zhu X, Zhang Z, . . . Chen R. Phylophenetic properties of metabolic pathway topologies as revealed by global analysis. BMC Bioinformatics 2006; 7:

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[3] Bu D, Zhao Y, Cai L, Xue H, Zhu X, Lu H, . . . Chen R. Topological structure analysis of the protein-protein interaction network in budding yeast. Nucleic Acids Res 2003; 31: 2443-2450.

[2] Bao Q, Tian Y, Li W, Xu Z, Xuan Z, Hu S, . . . Chen R, . . . Yang H. A complete sequence of the T tengcongensis genome. Genome Res 2002; 12: 689-700.

[1] Li W, Fang W, Ling L, Wang J, Xuan Z and Chen R. Phylogeny Based on Whole Genome as inferred from Complete Information Set Analysis. Journal of Biological Physics 2002; 28: 439-447.

（资料来源：陈润生院士，2024-07-30）